PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100227520111
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 412aa    MW: 45397.6 Da    PI: 6.6406
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100227520111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.25.5e-10163219155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+ ++ a++k++g
  Ote100227520111|100227520111 163 SIYRGVTRHRWTGRYEAHLWDnTCR-RegqARKGRQ-GGYDKEDKAARSYDLAALKYWG 219
                                   57*******************4444.2344336655.7799999*************98 PP

2AP250.26.3e-16262313155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Ote100227520111|100227520111 262 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 313
                                   57****************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-14163229IPR016177DNA-binding domain
CDDcd000181.78E-17163229No hitNo description
PfamPF008479.6E-8163219IPR001471AP2/ERF domain
PROSITE profilePS5103217.003164227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-11164228IPR001471AP2/ERF domain
SMARTSM003801.4E-20164233IPR001471AP2/ERF domain
PRINTSPR003671.5E-6165176IPR001471AP2/ERF domain
CDDcd000182.12E-11262323No hitNo description
PfamPF008473.3E-10262313IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-18262323IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-18263322IPR001471AP2/ERF domain
PROSITE profilePS5103219.151263321IPR001471AP2/ERF domain
SMARTSM003807.7E-32263327IPR001471AP2/ERF domain
PRINTSPR003671.5E-6303323IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MYTEAESHQL KEHGGHAAVP TTAYMQXXXX XXXXXDFFTD GDSTETQNSS LTHIYEHHQA  60
GGAAAYFSSH EHQDHLNAVA GFQAFSANSG SDVDDSALAA QTQSPAESGS ELVAYNCPIS  120
AATNTTTNAL SLGVVNDNNN SVIARVDSES CKKIADTFGQ RTSIYRGVTR HRWTGRYEAH  180
LWDNTCRREG QARKGRQGGY DKEDKAARSY DLAALKYWGP TATTNFPISN YTKELEEMKH  240
VTKQEFIASL RRQSSGFSRG ASIYRGVTRH HQQGRWQARI GRVAGNKDLY LGTFATEEEA  300
AEAYDIAAIK FRGVNAVTNF EMSRYDVEAI SESPLPIGGA AKRMKLSLEG EEKLPLQTSC  360
TSNNSSSNNV SCFGIQPPFY HHNLFHHIDS GASGSVSAMV APEFFIWPHQ SF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097469.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU21e-136AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A068U1U01e-170A0A068U1U0_COFCA; Uncharacterized protein
STRINGVIT_00s0772g00020.t011e-162(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449